PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00037476001
Common NameGSBRNA2T00037476001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family GeBP
Protein Properties Length: 253aa    MW: 28380.2 Da    PI: 10.0767
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00037476001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57386.43.7e-2759144397
               DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 
                          ++r+w+eeDe+++L+Gl++++a++g +p++++ +fy+fv +si  k+sk+q+++Kir+LK Kf  +++k         ++++ +++f ls
  GSBRNA2T00037476001  59 SSRIWNEEDELTVLKGLVEYQAQKGNEPKSNWGDFYRFVGGSITGKFSKEQVLTKIRKLKAKFIANMQK---------ANTSKSEAFLLS 139
                          78*******************************************************************.........667778899999 PP

               DUF573  93 kkiWg 97 
                          k+iWg
  GSBRNA2T00037476001 140 KSIWG 144
                          99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1014478.89E-53038No hitNo description
PfamPF045045.2E-2160144IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MNLDFPDGTS PPSHIPRSRK SPRKNASKPS PPPPPPPPEP ATEHVTNKKK KKKKALASSS  60
RIWNEEDELT VLKGLVEYQA QKGNEPKSNW GDFYRFVGGS ITGKFSKEQV LTKIRKLKAK  120
FIANMQKANT SKSEAFLLSK SIWGPQSESD QSADHTKSGE EMANHEPSNN EVTKADFEGN  180
EESWVVRDAF ETMVSKGLSD YQKKLQLEKL MNLGSGKRRE LSDEWKELCA EEVKLNIKKF  240
KFSAMLAEAA KW*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14753KKKKKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.45720.0flower| leaf| microspore| microspore-derived embryo| seed
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013644104.10.0PREDICTED: uncharacterized protein LOC106348835
TrEMBLA0A078J7J10.0A0A078J7J1_BRANA; BnaCnng40730D protein
STRINGAT4G00270.12e-54(Arabidopsis thaliana)
STRINGAl_scaffold_0006_13292e-54(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM61171741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.15e-57DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]