PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSBRNA2T00037476001

Common Name

GSBRNA2T00037476001

Organism

Brassica napus

Taxonomic ID

3708

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica

Family

GeBP

Protein Properties

Length: 253aa MW: 28380.2 Da PI: 10.0767

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSBRNA2T00037476001	genome	Genoscope	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	86.4	3.7e-27	59	144	3	97
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifels 92 ++r+w+eeDe+++L+Gl++++a++g +p++++ +fy+fv +si k+sk+q+++Kir+LK Kf +++k ++++ +++f ls GSBRNA2T00037476001 59 SSRIWNEEDELTVLKGLVEYQAQKGNEPKSNWGDFYRFVGGSITGKFSKEQVLTKIRKLKAKFIANMQK---------ANTSKSEAFLLS 139 78*******************************************************************.........667778899999 PP DUF573 93 kkiWg 97 k+iWg GSBRNA2T00037476001 140 KSIWG 144 99998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101447	8.89E-5	30	38	No hit	No description
Pfam	PF04504	5.2E-21	60	144	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MNLDFPDGTS PPSHIPRSRK SPRKNASKPS PPPPPPPPEP ATEHVTNKKK KKKKALASSS 60 RIWNEEDELT VLKGLVEYQA QKGNEPKSNW GDFYRFVGGS ITGKFSKEQV LTKIRKLKAK 120 FIANMQKANT SKSEAFLLSK SIWGPQSESD QSADHTKSGE EMANHEPSNN EVTKADFEGN 180 EESWVVRDAF ETMVSKGLSD YQKKLQLEKL MNLGSGKRRE LSDEWKELCA EEVKLNIKKF 240 KFSAMLAEAA KW*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	47	53	KKKKKKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Bna.4572	0.0	flower\| leaf\| microspore\| microspore-derived embryo\| seed

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013644104.1	0.0	PREDICTED: uncharacterized protein LOC106348835
TrEMBL	A0A078J7J1	0.0	A0A078J7J1_BRANA; BnaCnng40730D protein
STRING	AT4G00270.1	2e-54	(Arabidopsis thaliana)
STRING	Al_scaffold_0006_1329	2e-54	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	5e-57	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Chalhoub B, et al. Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 2014. 345(6199): p. 950-3 [PMID:25146293]